Here is the sort of thing I am seeing in the job log:
ERROR |The clause 'FACTORY_NAME Router and Unexpected Input Remover COMMAND_PARM_EVALUATION SINGLE_PASS MULTI_READER_KEYWORD ARCGISFEATURES_1' within 'FACTORY_DEF * RoutingFactory FACTORY_NAME Router and Unexpected Input Remover COMMAND_PARM_EVALUATION SINGLE_PASS MULTI_READER_KEYWORD ARCGISFEATURES_1 INPUT FEATURE_TYPE * ROUTE ARCGISFEATURES ARCGISFEATURES_1::CURRENT TO FME_GENERIC ::CURRENT ALIAS_GEOMETRY MERGE_INPUT Yes OUTPUT ROUTED FEATURE_TYPE *' is incorrect. It must look like: FACTORY_NAME <name>
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Note that I am creating the workspace in FME 2016 and running it from FME Server 2015. Does that matter?