From this Q&A;: ESRISHAPE readers don't fetch schemas from all source tables in ZIP archives
I was able to reproduce the situation too with FME 2017.0.0.1 build 17271. There seems to be a potential bug here. See the attached repro.
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Hi @takashi. Thank you for the repro. mattias has submitted a case to support, and support will investigate the issue.
FYI this has been filed in the system as PR76790. Thanks for the Repro Takashi