Question
How to avoid reading all feature types from a geodatabase even if only one feature type is on the canvas
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Have a look at the reader setting "Feature types to read" in the navigator.
Documentation: https://docs.safe.com/fme/html/FME_Desktop_Documentation/FME_Workbench/Workbench/reader_parameters_featuresToRead.htm
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The Feature Types To Read parameter in the navigator (under the Geodatabase reader) can control this.