In addition to @courtney_m's idea to replace WorkspaceRunners by FMEJobSubmitters (https://knowledge.safe.com/content/idea/33203/ability-to-replace-workspacerunners-with-fme-serve.html), I would like to suggest a hybrid Transformer handling both. It might be a technical hassle because of constraints of the two platforms, but if it existed it would save time both during development and maintenance of the Workspace.
Archived
Hybrid Transformer FMEJobSubmitter - WorkspaceRunner
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Alternatively you can test for a value on $(FME_SERVER_HOST) and direct to either accordingly.
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