Maybe it has something to do with the fact that in your closing statement you create a new empty feature and output that feature to the output port? See below:

    def close(self):

        self.create_lines_list()
        lines_with_group_ids = self.assign_group_ids_to_lines(self.lines)

        for line in lines_with_group_ids:
            feature = fmeobjects.FMEFeature()   <---- OVER HERE!
            feature.setAttribute('_group_id', line.get('Group Id', 0))
            self.pyoutput(feature)

And your original features are never sent to the output port and are missing. If you want the original geometry and attributes to your new features instead then you need to assign them to the new feature as well.

Hi @birgit ,

Ok, I figured it out.  I needed to make a list of the incoming features and then zip them with the new attribute.  It works!

import fme
import fmeobjects
from collections import defaultdict

class FeatureProcessor(object):

    def __init__(self):
        self.og_ids = d]
        self.closest = s]
        self.lines = e]
        self.features = e]  # Store references to the original features

    def input(self, feature: fmeobjects.FMEFeature):
        id_number = feature.getAttribute('_count_Glaz_H')
        if id_number is not None:
            self.og_ids.append(id_number)
            self.features.append(feature)  # Store the feature reference

        nearby_ids = feature.getAttribute('_closest{}._count_Glaz_H')
        if nearby_ids is not None:
            self.closest.append(nearby_ids)

    def create_lines_list(self):
        for id_number, nearby_ids in zip(self.og_ids, self.closest):
            if isinstance(nearby_ids, list):
                nearby_ids = ','.join(map(str, nearby_ids))
            line = {
                'Id Number': id_number,
                'Nearby Ids': dint(nearby_id) for nearby_id in nearby_ids.split(',') if nearby_id.strip().isdigit()]
            }
            self.lines.append(line)
        return self.lines

    def assign_group_ids_to_lines(self, lines):
        adjacency_list = defaultdict(list)
        for line in lines:
            id_num = line 'Id Number']
            nearby_ids = line 'Nearby Ids']
            for nearby_id in nearby_ids:
                adjacency_list_id_num].append(nearby_id)
                adjacency_list_nearby_id].append(id_num)

        def dfs(node, visited, group_id):
            stack = cnode]
            while stack:
                current = stack.pop()
                if current not in visited:
                    visited.add(current)
                    for line in self.lines:
                        if line 'Id Number'] == current:
                            line 'Group Id'] = group_id
                            break
                    for neighbor in adjacency_list_current]:
                        if neighbor not in visited:
                            stack.append(neighbor)

        visited = set()
        group_id = 1
        for line in self.lines:
            id_num = line 'Id Number']
            if id_num not in visited:
                dfs(id_num, visited, group_id)
                group_id += 1

        return self.lines

    def close(self):
        self.create_lines_list()
        lines_with_group_ids = self.assign_group_ids_to_lines(self.lines)

        for line, feature in zip(lines_with_group_ids, self.features):
            feature.setAttribute('_group_id', line.get('Group Id', 0))
            self.pyoutput(feature)

    def process_group(self):
        pass