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I don't see any readers or writers for Mapbox datasets and was wondering how you can manipulate. Trying to manipulate the vector data in the map opposed to the Tiles. Any help would be great, thanks.

Currently FME only supports the SQLite MBTiles format. That's for tilesets. Datasets can be stored in MapBox in GeoJSON format so if you can get access to that you can transform it using the various JSON readers and transformers.