I have a python script that I want to know how to run in FME that way so I don't have to manually trigger it? Any advice would be greatly appreciated.
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FME has its own readers/writers that can work with AGOL Data - https://docs.safe.com/fme/html/FME_Desktop_Documentation/FME_ReadersWriters/arcgisonlinefeatures/arcgisonlinefeatures.htm
You may be able to jsut use standard FME transformers to achieve what you're aiming for.
If you do need the python, have a look here - https://community.safe.com/s/article/using-arcpy-for-fme-feature-processing
Thank you!