Hi @mralex007,
The LoD tiles are 1000m * 1000m, with the lower left corner specified in the tile name.
So the tile LoD2_32_280_5657_1_NW.gml would have its lower left at 280000, 5657000 in the coordinate system EPSG:25832.
The easiest way to get the data is to reproject your selection polygon to EPSG:25832 (if needed), scale it by 0.001, then round the coordinates to 0 decimal places. Extract the coordinates as a list - each unique coordinate will specify a tile to download to cover the original selection.
You can use the FeatureReader transformer to read a CityGML dataset directly from the URL of the tile. You will need to set the reader parameter Reader Driven by CityGML Schema to No, however.