When you save an FME script that has UNC references to readers or writers, FME often replaces that UNC path with $(FME_MF_DIR). However, this causes problems in FME Server, which uploads the FMW script to the FME Server folder and can't find the reader or writer using $(FME_MF_DIR).
I would like an option in the FME Options dialog so that you could turn this behaviour off. When I use a UNC path there is no need to convert it to $(FME_MF_DIR). The path will always be the same whether FME is reading it on the server or on a desktop