Hi @jitkam, thanks for posting your question!
It's a bit bizarre that the geometry would disappear when using the Aggregator. To further investigate, would you be able to provide your workspace and some sample data?
Another transformer to try in this situation would be the Dissolver. This will dissolve shared boundaries and output one feature. Which transformer to use will depend on the details of your desired output, as well as how you'd like your attributes to be merged. You might want to take a read through the documentation on the two transformers to see which is the best fit:
Aggregator and
Dissolver.
Hope this helps!
All best,
Nathan