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FME is writing a the geometry column as:

GEOMETRYCOLLECTION (GEOMETRYCOLLECTION EMPTY, POINT (Y X))

 

When it should be outputting as

POINT (Y X)

 

Is there a way to correct this?

The geometry you want to write looks te be a nested collection. You can try to explode this to single geometries by using the DeAggregator, parameter Mode: All Levels.

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