I then tested my GIS software which has an import system for AutoCAD DXF and Garmin Mapsource also has a way to save the GDB file into and AutoCAD DXF. This is a round about and manual way to get the waypoints into my GIS software, but they are much more accurate, between 2.5 and 5 feet.
Can anyone guess as to why the large error is ocurring in FME? I do use a reprojector to get the waypoints to UTM83-15F and I suspect that is where the error is ocurring. Anyway to improve the accuracy of this conversion?