I'm trying to run a workspace in FME Server and I'm getting a message: "The workspace has Python Compatibility set to 'Esri ArcGIS Python 3.9' which requires ArcGIS Pro...." I have ArcGIS Pro installed. The workspace runs fine in FME Desktop.
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Do you have arcgis pro installed on your FMEServer? Works best with a single use license, on the same user that runs the FME Server engine.