I tried with chopper, buffer and PointOnAreaOverlap but I don't manage to modify the polygon. Due to the accuracy problems and different sources the vertices are close to about 1-2cm. How to modify the big polygon to the vertices of the small one automatically? Thank you for help!!
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Try Snapper/AnchoredSnapper or AreaGapAndOverlapCleaner with tolerance set to include your known vertex distance.
AnchoredSnapper is exactly what I was looking for...thank you caracadrian!!